MUSE Pipeline Reference Manual  2.1.1
Modules
Here is a list of all modules:
 Artifact handling
 Astronomical tools
 Basic-processing function
 Combination of images
 CPL wrappers
 DAR (Differential Atmospheric Refraction)
 External FITS table formats
 Datacube handling
 2D Source Detection
 Flux calibration
 Geometrical calibration
 ESO science data product format support
 Image handling for the MUSE format
 Imagelist processing for the four-extension image format
 Line Spread Function related functions
 Mask handling
 Protected access to FITS headers
 Physics functions for the MUSE pipeline
 Pixel grid
 Pixel table handling
 Post-processing functions
 Processing framework
 Quadrants and other CCD regions
 Quality flag handling
 Resampling
 Radial velocity corrections
 Sky subtraction
 Table handling
 Tracing
 Utilities
 Wavelength calibration
 World coordinate system (WCS) related functions
 Xposure combination
 Tool muse_badpix_from_ascii
 Tool muse_badpix_from_dq
 Tool muse_badpix_from_region
 Tool muse_cube_combine
 Tool muse_cube_concatenate
 Tool muse_cube_filtermuse_cube_filter: Add filtered images for existing MUSE cubes
 Tool muse_fill_image
 Tool muse_geo_plot
 Tool muse_geo_smooth
 Tool muse_image_fwhm
 Tool muse_offset_list_createmuse_offset_list_create: Create (empty) OFFSET_LIST file
 Tool muse_pixtable_crop
 Tool muse_pixtable_dump
 Tool muse_pixtable_erase_slice
 Tool muse_product_sign
 Tool muse_product_split
 Tool muse_products_merge
 Tool muse_trace_plot_samples
 Tool muse_trace_plot_widths
 Tool muse_wave_plot_column
 Tool muse_wave_plot_residuals
 Recipe muse_ampl: Determine the instrumental throughput from exposures taken with the pico-amplifier / photo diode readings.
 Recipe muse_astrometry: Compute an astrometric solution.
 Recipe muse_bias: Combine several separate bias images into one master bias file.
 Recipe muse_create_sky: Create night sky model from selected pixels of an exposure of empty sky.
 Recipe muse_dark: Combine several separate dark images into one master dark file and locate hot pixels.
 Recipe muse_exp_align: Create a coordinate offset table to be used to align exposures during exposure combination.
 Recipe muse_exp_combine: Combine several exposures into one datacube.
 Recipe muse_flat: Combine several separate flat images into one master flat file, trace slice locations, and locate dark pixels.
 Recipe muse_geometry: Compute relative location of the slices within the field of view and measure the instrumental PSF on the detectors.
 Recipe muse_lingain: Compute the gain and a model of the residual non-linearity for each detector quadrant
 Recipe muse_lsf: Compute the LSF
 Recipe muse_qi_mask: Create image masks for use with the quick image reconstruction.
 Recipe muse_scibasic: Remove the instrumental signature from the data of each CCD and convert them from an image into a pixel table.
 Recipe muse_scipost_apply_astrometry: Calibrate astrometry for MUSE pixel tables.
 Recipe muse_scipost_calibrate_flux: Calibrate flux for MUSE pixel tables.
 Recipe muse_scipost_combine_pixtables: Combine MUSE pixel tables, either from different IFUs, or from different exposures, or both.
 Recipe muse_scipost_correct_dar: Apply DAR correction for MUSE pixel tables.
 Recipe muse_scipost_correct_rv: Apply RV correction for MUSE pixel tables.
 Recipe muse_scipost_make_cube: Make a MUSE cube from a MUSE pixel table.
 Recipe muse_scipost_subtract_sky_simple: Subtract night sky spectrum.
 Recipe muse_scipost_subtract_sky: Subtract night sky model.
 Recipe muse_scipost: Prepare reduced and combined science products.
 Recipe muse_standard: Create a flux response curve from a standard star exposure.
 Recipe muse_twilight: Combine several twilight skyflats into one cube, compute correction factors for each IFU, and create a smooth 3D illumination correction.
 Recipe muse_wavecal: Detect arc emission lines and determine the wavelength solution for each slice.